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Clinical_connec...
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UKLFR
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stroke_UKLFR
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anat
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sub-STUKLFR0077
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tmp_lh.area.mris_preproc.log.bak

tmp_lh.area.mris_preproc.log.bak 4.4 KB
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  1. ven 23 ott 2026, 19.33.50, CEST
    2. 

  2. setenv SUBJECTS_DIR /g100_work/EIRI_E_UNIPD/data/derivatives/UKLFR/stroke_UKLFR/anat/vbg/STUKLFR0077/output_VBG/sub-STUKLFR0077/sub-STUKLFR0077fastsurfer
    3. 

  3. cd /g100/home/userexternal/anazzi00/ANATpipe
    4. 

  4. /g100_work/EIRI_E_UNIPD/freesurfer/bin/mris_preproc --s sub-STUKLFR0077 --target fsaverage --hemi lh --meas area --out /g100_work/EIRI_E_UNIPD/data/derivatives/UKLFR/stroke_UKLFR/anat/sub-STUKLFR0077/features/tmp_lh.area.mgh
    5. 

  5. 

  6. Linux r515n015 4.18.0-240.el8.x86_64 #1 SMP Fri Sep 25 19:48:47 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
    7. 

  7. $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $
    8. 

  8. freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55a
    9. 

  9. tmpdir is /g100_work/EIRI_E_UNIPD/data/derivatives/UKLFR/stroke_UKLFR/anat/sub-STUKLFR0077/features/tmp.mris_preproc.42657
    10. 

  10. Src lh sphere.reg
    11. 

  11. Trg lh sphere.reg
    12. 

  12. 

  13. 

  14. 

  15. 

  16. ---------------------------------------------------
    17. 

  17. #@# 1/1 sub-STUKLFR0077 ven 23 ott 2026, 19.33.50, CEST --------------
    18. 

  18. -----------------------
    19. 

  19. mri_surf2surf --srcsubject sub-STUKLFR0077 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval /g100_work/EIRI_E_UNIPD/data/derivatives/UKLFR/stroke_UKLFR/anat/sub-STUKLFR0077/features/tmp.mris_preproc.42657/sub-STUKLFR0077.1.mgh --sval /g100_work/EIRI_E_UNIPD/data/derivatives/UKLFR/stroke_UKLFR/anat/vbg/STUKLFR0077/output_VBG/sub-STUKLFR0077/sub-STUKLFR0077fastsurfer/sub-STUKLFR0077/surf/lh.area --jac --sfmt curv --noreshape --cortex
    20. 

  20. Source registration surface changed to sphere.reg
    21. 

  21. Target registration surface changed to sphere.reg
    22. 

  22. 

  23. $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $
    24. 

  24. 

  25. setenv SUBJECTS_DIR /g100_work/EIRI_E_UNIPD/data/derivatives/UKLFR/stroke_UKLFR/anat/vbg/STUKLFR0077/output_VBG/sub-STUKLFR0077/sub-STUKLFR0077fastsurfer
    26. 

  26. cd /g100/home/userexternal/anazzi00/ANATpipe
    27. 

  27. mri_surf2surf --srcsubject sub-STUKLFR0077 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval /g100_work/EIRI_E_UNIPD/data/derivatives/UKLFR/stroke_UKLFR/anat/sub-STUKLFR0077/features/tmp.mris_preproc.42657/sub-STUKLFR0077.1.mgh --sval /g100_work/EIRI_E_UNIPD/data/derivatives/UKLFR/stroke_UKLFR/anat/vbg/STUKLFR0077/output_VBG/sub-STUKLFR0077/sub-STUKLFR0077fastsurfer/sub-STUKLFR0077/surf/lh.area --jac --sfmt curv --noreshape --cortex 
    28. 

  28. 

  29. sysname  Linux
    30. 

  30. hostname r515n015
    31. 

  31. machine  x86_64
    32. 

  32. user     anazzi00
    33. 

  33. srcsubject = sub-STUKLFR0077
    34. 

  34. srcval     = /g100_work/EIRI_E_UNIPD/data/derivatives/UKLFR/stroke_UKLFR/anat/vbg/STUKLFR0077/output_VBG/sub-STUKLFR0077/sub-STUKLFR0077fastsurfer/sub-STUKLFR0077/surf/lh.area
    35. 

  35. srctype    = curv
    36. 

  36. trgsubject = fsaverage
    37. 

  37. trgval     = /g100_work/EIRI_E_UNIPD/data/derivatives/UKLFR/stroke_UKLFR/anat/sub-STUKLFR0077/features/tmp.mris_preproc.42657/sub-STUKLFR0077.1.mgh
    38. 

  38. trgtype    = 
    39. 

  39. srcsurfreg = sphere.reg
    40. 

  40. trgsurfreg = sphere.reg
    41. 

  41. srchemi    = lh
    42. 

  42. trghemi    = lh
    43. 

  43. frame      = 0
    44. 

  44. fwhm-in    = 0
    45. 

  45. fwhm-out   = 0
    46. 

  46. label-src  = lh.cortex.label
    47. 

  47. label-trg  = lh.cortex.label
    48. 

  48. OKToRevFaceOrder  = 1
    49. 

  49. UseDualHemi = 0
    50. 

  50. Reading source surface reg /g100_work/EIRI_E_UNIPD/data/derivatives/UKLFR/stroke_UKLFR/anat/vbg/STUKLFR0077/output_VBG/sub-STUKLFR0077/sub-STUKLFR0077fastsurfer/sub-STUKLFR0077/surf/lh.sphere.reg
    51. 

  51. Loading source data
    52. 

  52. Reading curvature file /g100_work/EIRI_E_UNIPD/data/derivatives/UKLFR/stroke_UKLFR/anat/vbg/STUKLFR0077/output_VBG/sub-STUKLFR0077/sub-STUKLFR0077fastsurfer/sub-STUKLFR0077/surf/lh.area
    53. 

  53. Reading source subject label mask lh.cortex.label
    54. 

  54. masking the input
    55. 

  55. Reading target surface reg /g100_work/EIRI_E_UNIPD/data/derivatives/UKLFR/stroke_UKLFR/anat/vbg/STUKLFR0077/output_VBG/sub-STUKLFR0077/sub-STUKLFR0077fastsurfer/fsaverage/surf/lh.sphere.reg
    56. 

  56. Done
    57. 

  57. Using surf2surf_nnfr()
    58. 

  58. Mapping Source Volume onto Source Subject Surface with Jacobian Correction
    59. 

  59. surf2surf_nnfr_jac: building source hash (res=16).
    60. 

  60. Surf2SurfJac: 1st Forward Loop (163842)
    61. 

  61. Surf2SurfJac: 2nd Forward Loop (163842)
    62. 

  62. surf2surf_nnfr: building target hash (res=16).
    63. 

  63. Surf2SurfJac: Reverse Loop (147802)
    64. 

  64. Reverse Loop had 20420 hits
    65. 

  65. INFO: nSrcLost = 0
    66. 

  66. surf2surf_nnfr_jac() done
    67. 

  67. nTrg121 = 145243, nTrgMulti = 18599, MnTrgMultiHits = 2.09791
    68. 

  68. nSrc121 = 116335, nSrcLost =     0, nSrcMulti = 31467, MnSrcMultiHits = 2.15867
    69. 

  69. Reading target space mask label lh.cortex.label
    70. 

  70. masking the input
    71. 

  71. Saving target data
    72. 

  72. Saving to /g100_work/EIRI_E_UNIPD/data/derivatives/UKLFR/stroke_UKLFR/anat/sub-STUKLFR0077/features/tmp.mris_preproc.42657/sub-STUKLFR0077.1.mgh
    73.